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Learn how autoimmune diseases affect the body, what symptoms they may cause, how they are diagnosed, and the treatments and follow-up care that can help.
Autoimmune diseases are a large group of conditions in which the immune system mistakenly attacks the body's own cells, tissues, or organs. The immune system normally protects against infections and other harmful substances. In an autoimmune disease, parts of this defense system become misdirected.
Some autoimmune diseases mainly affect one organ. For example, Hashimoto's disease affects the thyroid gland, and type 1 diabetes damages insulin-producing cells in the pancreas. Others can affect several parts of the body. Lupus may involve the skin, joints, kidneys, blood cells, lungs, heart, or nervous system.
Other examples include rheumatoid arthritis, multiple sclerosis, celiac disease, inflammatory bowel disease, psoriasis, psoriatic arthritis, and Sjögren's disease. Each condition has its own pattern, diagnostic criteria, and treatment.
Many autoimmune diseases are long-term conditions. Symptoms may come and go. A period of increased disease activity is often called a flare, while a period when symptoms and inflammation improve may be called remission. Remission does not always mean that the disease has permanently gone away.
Autoimmune diseases matter because uncontrolled inflammation can affect daily life and, in some conditions, damage organs over time. Early evaluation, appropriate treatment, and regular follow-up can reduce symptoms and help protect health.
Symptoms vary widely depending on which tissues are affected. They may develop gradually, appear suddenly, or change over time. Several other health problems can cause similar symptoms, so symptoms alone cannot confirm an autoimmune disease.
Possible symptoms include:
Symptoms often overlap across conditions. Fatigue and joint pain, for example, occur in many autoimmune diseases but can also result from infections, anemia, sleep disorders, medication effects, thyroid problems, and other causes.
A flare may involve the return of previous symptoms or the development of new ones. Possible triggers differ among people and diseases. Infection, major stress, sun exposure, smoking, medication changes, and hormonal changes may play a role in some conditions. Symptoms do not always reflect the amount of internal inflammation, which is why laboratory tests or imaging may still be needed during follow-up.
There is no single cause of autoimmune disease. Researchers believe these conditions usually develop through a combination of genetic susceptibility and environmental or biological exposures. Having a genetic tendency does not mean that a person will definitely develop an autoimmune disease.
Factors that may affect risk include:
Autoimmune disease is not caused by a person's attitude, diet, or stress alone. Stress can affect symptoms and coping, but it is not a complete explanation for the immune system changes involved.
There is no single test that detects every autoimmune disease. Diagnosis usually combines the medical history, physical examination, laboratory findings, imaging, and sometimes a tissue sample called a biopsy.
A clinician may ask about the timing and pattern of symptoms, recent infections, medicines, pregnancy history, smoking, work exposures, and family medical history. The physical examination may focus on the skin, joints, muscles, nerves, eyes, mouth, heart, lungs, abdomen, or thyroid, depending on the symptoms.
Blood and urine testing may include:
An antinuclear antibody, or ANA, test is sometimes used when lupus or another connective tissue disease is suspected. A positive ANA does not by itself diagnose an autoimmune disease. Some healthy people have a positive result, and the test may also be positive for other reasons. Likewise, a normal result does not exclude every autoimmune condition.
Imaging may include X-rays, ultrasound, MRI, CT scans, or other studies. A biopsy may be needed to examine skin, kidney, bowel, liver, muscle, or another tissue under a microscope.
Reaching a diagnosis can take time because early symptoms may be nonspecific or may appear in stages. Depending on the suspected condition, care may involve a rheumatologist, endocrinologist, neurologist, gastroenterologist, dermatologist, immunologist, or another specialist.
Treatment depends on the specific disease, the organs affected, symptom severity, test results, other medical conditions, and personal priorities. The goals may include controlling inflammation, easing symptoms, preventing organ damage, replacing substances the body can no longer make, and maintaining daily function.
Common treatment approaches include:
Medicines that reduce immune activity can increase susceptibility to some infections. Before and during treatment, a clinician may recommend blood tests, infection screening, or other monitoring. Vaccination plans should be reviewed with the treating team because the timing and choice of vaccines can depend on the medicine and degree of immune suppression. Live vaccines may not be appropriate with certain treatments.
Do not stop corticosteroids, immune-suppressing medicines, insulin, thyroid hormone, or other prescribed treatment without medical guidance. Sudden changes can cause withdrawal effects, disease flares, or other complications.
Daily management is tailored to the condition. Regular movement can support joint mobility, muscle strength, sleep, and cardiovascular health. Activity may need to be adjusted during a flare. A balanced diet can support general health, but no single diet treats all autoimmune diseases. Strict food avoidance is medically necessary for some conditions, such as avoiding gluten in celiac disease, but it is not appropriate for every autoimmune disorder.
Avoiding tobacco is especially important. Sun protection may help people whose condition is sensitive to ultraviolet light. Sleep, pacing activities, and mental health support can also make persistent symptoms easier to manage.
People who are pregnant, planning pregnancy, or breastfeeding should review medicines and disease control with their clinicians. Some treatments need to be changed in advance, while stopping other medicines may be riskier than continuing them. Decisions should be individualized.
Complications depend on the disease and the organs involved. Persistent inflammation may cause joint damage, scarring, nerve injury, bowel damage, or reduced function of the kidneys, lungs, heart, thyroid, or other organs.
Some autoimmune diseases increase the risk of blood clots, cardiovascular disease, bone loss, anemia, or infection. The disease itself, reduced physical activity, and certain medicines may each contribute. Regular screening and treatment monitoring help clinicians identify these problems early.
Living with unpredictable symptoms can also affect work, school, relationships, sleep, and emotional health. Anxiety or depression can occur alongside chronic illness and deserve appropriate care. These concerns are not a sign that physical symptoms are imagined.
Treatment can cause complications as well. The risks vary greatly by medicine and may include infection, liver or kidney changes, low blood cell counts, high blood sugar, or weaker bones. Monitoring is chosen according to the treatment being used.
Routine follow-up may include reviewing symptoms, examining affected organs, checking laboratory results, monitoring medicine safety, and updating vaccinations and preventive care. Keep a current list of medicines and supplements, including nonprescription products. A brief record of symptoms, possible triggers, and effects on daily activities can help during appointments.
Contact the treating clinician promptly for new or clearly worsening symptoms, a possible medication reaction, signs of infection, or a flare that is not responding to the agreed management plan. Fever or infection symptoms deserve particular attention when taking medicines that suppress the immune system.
Seek urgent medical assessment for symptoms such as a new painful swollen leg, sudden vision change, significant weakness, blood in the urine, persistent vomiting, or rapidly worsening shortness of breath.
Call emergency services for severe trouble breathing, chest pain, fainting, sudden one-sided weakness, difficulty speaking, a seizure, confusion, uncontrolled bleeding, or signs of a serious allergic reaction such as swelling of the face or throat. These symptoms can have many causes and require immediate evaluation.
sofidex [Internet]. Daloreum; c2026. Autoimmune diseases; [reviewed 2025 Mar 1; cited 2026 Nov 10]. Available from: https://sofidex.com/patients/conditions/autoimmune-diseases
sofidex. (2025, March 1). Autoimmune diseases. Daloreum. Retrieved November 10, 2026, from https://sofidex.com/patients/conditions/autoimmune-diseases
Autoimmune diseases. sofidex. Reviewed March 1, 2025. Accessed November 10, 2026. https://sofidex.com/patients/conditions/autoimmune-diseases
The cited date is today’s, because a citation records when you read the page. The reviewed date is when a clinician last checked it.